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BioRAT:

A search engine and information extraction tool for biological research

David Corney, David Jones and Bernard Buxton

We applied BioRAT to download and analyse a set of 10 documents mentioned in the DIP database. The same results are shown here in 4 different formats, and below them is a zipped copy of the templates.


Example DIP results (pretty) This shows some example results, reformatted to include hyperlinks to the DIP and Swiss-Prot websites, for convenience.

Example DIP results (raw) This shows the actual output from BioRAT, in HTML format. The columns shown are: filename, template name, location within document, protein 1, protien 2, context sentence.

Example DIP results (csv) This shows the actual output from BioRAT, in comma-separated format. This can be displayed in a spreadsheet package, for example

Example DIP results (xml) This shows the actual output from BioRAT, in XML format.


BioRAT templates for DIP This zip file contains a set of 4 templates used to generate the above results.

The papers used for the above results have these PubMed ID values: 10022891 10024454 10026184 10026191 10026196 10026281 10048790 10049744 10049915 10064605

For queries regarding BioRAT: d.corney@cs.ucl.ac.uk