Dompred Server DomPred Help Page Login
Dompred is a server designed to predict putative protein domains and their boundaries for a given protein sequence. The server uses several methods, from identifying obvious similarities to Pfam-A domain sequences to predicting domains using DomSSEA in cases where sequence searching has yielded no results. The service allows you to predict the number of domains and their possible boundaries with the protein sequence. Further information can be found in the supplementary material and more detailed instructions are available in the help pages.
This server is run on a strictly best-efforts basis. We aim the service primarily at biologists trying to analyse their own sequences, as such the service is designed for users who submit small numbers of jobs to the queue in any given day.
We recognise that increasingly there are projects that need more substantial access to the server, but our current web servers have only limited capacity. Users running automated scripts against our services without prior agreement will be banned.
If we find that users are abusing the good faith of the service then their site access may be restricted or in extreme cases blocked completely. We hope such cases will be rare and we will only resort to blocking sites if repeat usage is severely interfering with the service for other users.
Since October 2010, users may submit unlimited jobs to the queue per day but users are limited to not more than 10 concurrent jobs. All results will remain available on our server for 5 days after which time they will be deleted. If you need high-priority or high-capacity access to our server then please contact us to discuss purchasing dedicated server capacity or the possibility of collaboration. For instance, if you are running a genomics project or meta-server that needs to submit hundreds of jobs per day to our server then we can now offer this capacity at cost. You remain welcome to make use of the free service, but only at the default low priority.
We do not require that users submit email addresses but users may find it useful to provide one in order to receive email alerts when their jobs complete. Email addresses submitted to our web site are used to return analysis results. We also use email addresses to track user's server usage and we may use them to contact users should any problems that may arise as a result of their data submissions. We will not use your email address for any other purpose or pass them on to third parties. Please be aware that this site uses Google Analytics to track user behaviour on this site.
All data submitted to this web service is made publicly accessible, and we do not guarantee confidentiality. This may affect your ability to seek intellectual property protection for your data. If you do not wish to publicly disclose your data you may either download our software or you can contact us to discuss the possibility of a collaboration
This server is available for commercial use. However all results generated are publicly accessible. If you wish to have secure private access or you wish to licence the relevant software please contact Ebisu. They can provide a very quick response to any commercial enquiries regarding access to our web servers, software, databases or bioinformatics consultancy services.
Kevin Bryson & Daniel Buchan
Russell L. Marsden & Liam J. McGuffin
Marsden, R.L., McGuffin, L.J. & Jones, D.T. (2002) Rapid protein domain assignment from amino acid sequence using predicted secondary structure. Protein Science, 11, 2814-2824.