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PSIPRED Publications

Please use the following references when citing PSIPRED

The PSIPRED server

  • Buchan DWA, Minneci F, Nugent TCO, Bryson K, Jones DT. (2013). Scalable web services for the PSIPRED Protein Analysis Workbench . Nucleic Acids Research .  41 (W1): W340-W348.

The PSIPRED secondary structure prediction method

  • Jones DT. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292: 195-202.


  • Lobley, A., Sadowski, M.I. & Jones, D.T. (2009) pGenTHREADER and pDomTHREADER: New Methods For Improved Protein Fold Recognition and Superfamily Discrimination. Bioinformatics. 25, 1761-1767.
  • McGuffin LJ & Jones DT. (2003) Improvement of the GenTHREADER method for genomic fold recognition. Bioinformatics, 19, 874-881.
  • Jones DT. (1999) GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. J. Mol. Biol. 287: 797-815.


  • Nugent, T. & Jones, D.T. (2009) Transmembrane protein topology prediction using support vector machines. BMC Bioinformatics. 10, 159. Epub
  • Jones DT. (2007) Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics. 23: 538-544.
  • Jones DT, Taylor WR, Thornton JM. (1994) A Model Recognition Approach to the Prediction of All-Helical Membrane Protein Structure and Topology. Biochem. 33: 3038-3049.