Software
The Bioinformatics Group places a great deal of emphasis on developing software which is widely used by many groups and institutions. These include:
Information extraction for biological research | |
Improved 64-bit Cyclic Redundancy Check for Protein Sequences | |
Protein intrinsic disorder prediction | |
Folding In Lipid Membranes | |
Eukaryotic protein function prediction | |
CUDA Fragment Assembly Based Protein Structure Prediction | |
Job Yield Distribution Environment version 2.0 Membrane protein orientation and refinement using a knowledge-based statistical potential | |
Transmembrane protein structure prediction | |
SVM Transmembrane protein structure prediction | |
SVM prediction of membrane helix packing | |
Original PET91 substitution matrix data | |
Sequence filtering for low-complexity, coiled-coil and biased amino acid regions | |
Protein fold recognition by profile-profile threading | |
Accurate protein secondary structure prediction | |
Protein fold recognition by threading Accurate Contact Prediction from large protein alignments Accurate Contact and H-Bond Prediction using three different covariance methods Packages for running PSIPRED, pGenTHREADER and DISOPRED using cloud services. |
Most of these tools are also available as Web Servers.
All our software is free for academic use. Commercial users should consult EBISU for advice on licensing prior to downloading.