Software
The Bioinformatics Group places a great deal of emphasis on developing software which is widely used by many groups and institutions. These include:
| BioRAT | Information extraction for biological research |
| CRC64 | Improved 64-bit Cyclic Redundancy Check for Protein Sequences |
| DISOPRED | Protein intrinsic disorder prediction |
| FILM3 | Folding In Lipid Membranes |
| FFPred | Eukaryotic protein function prediction |
| GPGPUFRAGFOLD | CUDA Fragment Assembly Based Protein Structure Prediction |
Job Yield Distribution Environment version 2.0 Membrane protein orientation and refinement using a knowledge-based statistical potential | |
| MEMSAT3 | Transmembrane protein structure prediction |
| MEMSAT-SVM | SVM Transmembrane protein structure prediction |
| MEMPACK | SVM prediction of membrane helix packing |
| PET91 Matrices | Original PET91 substitution matrix data |
| pfilt | Sequence filtering for low-complexity, coiled-coil and biased amino acid regions |
| pGenTHREADER | Protein fold recognition by profile-profile threading |
| PSIPRED | Accurate protein secondary structure prediction |
Protein fold recognition by threading Accurate Contact Prediction from large protein alignments Accurate Contact and H-Bond Prediction using three different covariance methods Packages for running PSIPRED, pGenTHREADER and DISOPRED using cloud services. |
Most of these tools are also available as Web Servers.
All our software is free for academic use. Commercial users should consult EBISU for advice on licensing prior to downloading.