Software

The Bioinformatics Group places a great deal of emphasis on developing software which is widely used by many groups and institutions. These include:

BioRAT

Information extraction for biological research

CRC64

Improved 64-bit Cyclic Redundancy Check for Protein Sequences

DISOPRED

Intrinsic protein disorder prediction

GPGPUFRAGFOLD

CUDA Fragment Assembly Based Protein Structure Prediction

JYDE2

Job Yield Distribution Environment version 2.0

MEMSAT3

Transmembrane protein structure prediction

MEMSATSVM

SVM Transmembrane protein structure prediction

MEMPACK

SVM prediction of membrane helix packing

pfilt

Sequence filtering for low-complexity, coiled-coil and biased amino acid regions

pGenTHREADER

Protein fold recognition by profile-profile threading

PSIPRED

Accurate protein secondary structure prediction

THREADER

Protein fold recognition by threading

PSIPRED, MEMSAT3 and DISOPRED are also available as Web Servers.
All our software is free for academic use. Commercial users should consult EBISU for advice on licensing prior to downloading.


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