Software Downloads

The Bioinformatics Group places a great deal of emphasis on developing software which is widely used by many groups and institutions. These include:

BioRAT Information extraction for biological research
CRC64 Improved 64-bit Cyclic Redundancy Check for Protein Sequences
DISOPRED Protein intrinsic disorder prediction
FILM3 Folding In Lipid Membranes
FFPred Eukaryotic protein function prediction
GPGPUFRAGFOLD CUDA Fragment Assembly Based Protein Structure Prediction
JYDE2 Job Yield Distribution Environment version 2.0
MEMEMBED Membrane protein orientation and refinement using a knowledge-based statistical potential
MEMSAT3 Transmembrane protein structure prediction
MEMSAT-SVM SVM Transmembrane protein structure prediction
MEMPACK SVM prediction of membrane helix packing
PET91 Matrices Original PET91 substitution matrix data
pfilt Sequence filtering for low-complexity, coiled-coil and biased amino acid regions
pGenTHREADER Protein fold recognition by profile-profile threading
PSIPRED

Accurate protein secondary structure prediction
THREADER Protein fold recognition by threading
PSICOV Accurate Contact Prediction from large protein alignments
MetaPSICOV Accurate Contact and H-Bond Prediction using three different covariance methods

Most of these tools are also available as Web Servers.
All our software is free for academic use. Commercial users should consult EBISU for advice on licensing prior to downloading.

Logos and Branding

If you need to use the PSIPRED logo for publication you can download the following The PSIPRED logo is conventionally set on a blue background with the following values: HEX #3255A4 or RGB 50 85 164
You can download these and a number of other ancillary useful files from our branding github repo https://github.com/psipred/psipred_branding