Site Navigation

Server Navigation

The PSIPRED Structure Analysis Workbench

The PSIPRED Structure Analysis Workbench aggregates three structural analysis methods into one location. Users can submit protein structures, perform the analysis of their choice and receive the results of the prediction via e-mail and the web.
For a summary of the available methods please read More...

The PSIPRED Team
Current Contributors David T. Jones, Daniel Buchan, Tim Nugent, Federico Minneci & Kevin Bryson
Previous Contributors Anna Lobley, Sean Ward, Liam J. McGuffin

For queries regarding PSIPRED: psipred@cs.ucl.ac.uk

• Input
• Metsite Options
• HSPred Options

Choose Analysis Methods

MetSite (Protein-metal ion contact prediction) HSPred (Protein-protein hotspot residue prediction) Generate TDB (Generated custom threading database entries) Help...

Upload PDB file

help... If you wish to Metsite or HSPred follow this link to retrieve a test pdb file.

Submission Details

Email Address for job completion alert (optional) Help... Password (only required for licenced commercial e-mail addresses) Help... Short identifier for submission Help...

Select Metal Site Classifier
Calcium Zinc Magnesium Iron Copper Manganese help...
Prediction Chain
Indicate for which chain in the PDB file you wish to make metal binding predictions Chain ID: help...
Select False Positive Rate
1% 5% 10% 20% help...

HSPred Options

Interface Definition

List chain identifiers for the proteins on either face of the interface to be analysed. Use capital letters, space separate entries (e.g. "A B"). Protein 1: Protein 2: If using the test pdb file linked above: input "A" for 'Protein 1' and input "B" for 'Protein 2'. help...